PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G451100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 343aa MW: 38290.4 Da PI: 9.7743

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G451100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.4e-10	58	97	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le +L + ++ Sevir.2G451100.1.p 58 KTLRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 97 7889************************855444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-7	54	117	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.393	56	100	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.51E-7	58	101	No hit	No description
Pfam	PF00170	5.7E-7	58	99	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-7	59	103	No hit	No description
PROSITE pattern	PS00036	0	61	76	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.8E-34	140	215	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MADASSRTDT STVLDDNDKN QRIRSTKHLQ MENGQIMAAA PSNSSDRSDR SDKPLDQKTL 60 RRLAQNREAA RKSRLRKKAY VQQLESSKLK LAQLEQELQK ARQQGIFISS SGDQTHAMSG 120 NGALTFDIEY TRWLEEQNKQ INELRTAVNA HASDSDLRLI VDGIMAHYDE IFKVKGVAAK 180 ADVFHILSGM WKTPAERCFL WLGGFRPSEL LKLLANHLEP LTEQQLLGLT NLQQSSQQAE 240 DALSQGMEAL QQSLAETLAG SLGPSGSSGN VANYMGQMAM AMGKLGTLEN FLRQADNLRQ 300 QTLHQMQRIL TIRQASRALL AIHDYFSRLR ALSSLWLARP RE*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MADASSRTDT STVLDDNDKN QRIRSTKHLQ MENGQIMAAA PSNSSDRSDR SDKPLDQKTL  60
RRLAQNREAA RKSRLRKKAY VQQLESSKLK LAQLEQELQK ARQQGIFISS SGDQTHAMSG  120
NGALTFDIEY TRWLEEQNKQ INELRTAVNA HASDSDLRLI VDGIMAHYDE IFKVKGVAAK  180
ADVFHILSGM WKTPAERCFL WLGGFRPSEL LKLLANHLEP LTEQQLLGLT NLQQSSQQAE  240
DALSQGMEAL QQSLAETLAG SLGPSGSSGN VANYMGQMAM AMGKLGTLEN FLRQADNLRQ  300
QTLHQMQRIL TIRQASRALL AIHDYFSRLR ALSSLWLARP RE*

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269\|PubMed:16045470, ECO:0000269\|PubMed:22353606, ECO:0000269\|PubMed:27176732}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G451100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061586	0.0	BT061586.1 Zea mays full-length cDNA clone ZM_BFb0161M21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958748.1	0.0	transcription factor TGA2.2 isoform X1
Refseq	XP_012699555.1	0.0	transcription factor TGA2.2 isoform X1
Refseq	XP_012699556.1	0.0	transcription factor TGA2.2 isoform X1
Swissprot	Q7X993	0.0	TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBL	A0A368Q9D4	0.0	A0A368Q9D4_SETIT; Uncharacterized protein
STRING	GRMZM2G361847_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-146	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Sevir.2G451100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Chern M, et al. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet., 2016. 12(5): p. e1006049 [PMID:27176732]