PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G004300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 503aa    MW: 54448.8 Da    PI: 6.1143
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G004300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.43.6e-25110211199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+++a+++       + ++ +   l+++d+ g  W++++iyr++++r++lt+GW++Fv+a+ L +gD+vvF+ 
  Sevir.3G004300.1.p 110 FAKQLTQSDANNGGGFSVPRHCADHIfpklrfeDDPPVQ--NLVMRDPVGDHWQFRHIYRGTPRRHLLTTGWSKFVNAKLLVAGDTVVFM- 197
                         89*********************777*****96555555..6************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          +r ++el+++++r+
  Sevir.3G004300.1.p 198 -RRPDGELLIGLRRA 211
                         .679********997 PP
2Auxin_resp53.69.7e-19241309167
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvs 67 
                         aa+ a+++s+F+v Y Pr++++eFvv++++ve+al +++ +G++++m+ +e ed++++++  Gt   ++
  Sevir.3G004300.1.p 241 AARLAAEGSPFTVNYFPRQGAAEFVVPRKEVEDALASRWEPGTQVRMQvMEAEDARRTEWaNGTLNKLH 309
                         688999*****************************************858**********999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-27106213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-33108213IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-21109210No hitNo description
PfamPF023626.6E-22110211IPR003340B3 DNA binding domain
SMARTSM010191.7E-18110212IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07110212IPR003340B3 DNA binding domain
PfamPF065074.7E-14241310IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAHHQPPPAA ADDPIVDRDV WLACAIPLSR LPVVGAQVYY FPHGHAEQCP DHLPAPLPTP  60
HLFPCTVTAV GLGADDKTNE VFAQISLQPG PHRGPPPPAP DAADLNLSFF AKQLTQSDAN  120
NGGGFSVPRH CADHIFPKLR FEDDPPVQNL VMRDPVGDHW QFRHIYRGTP RRHLLTTGWS  180
KFVNAKLLVA GDTVVFMRRP DGELLIGLRR APRYPVVARA ADQPPPCNAR ARVPPGDVME  240
AARLAAEGSP FTVNYFPRQG AAEFVVPRKE VEDALASRWE PGTQVRMQVM EAEDARRTEW  300
ANGTLNKLHP NIWRALEIDW DDSSPFSLTR SRYVNAWQVQ FVSFPPLLKR LRISDTMAPL  360
CSGDVSSLAA PLIGPESQAM AILLGSPIPA GMQGARHDVP PSSSTLGMLT TQLLFPQLSS  420
DLQMPPSVNS GGSSEILDPE TGSPPNNSVN MPPAELPVEA KGIQLFGAII NPHVVQRATN  480
GASEEVNGAI NGVVDENVGK DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-60932244372Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G004300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673271e-151BT067327.1 Zea mays full-length cDNA clone ZM_BFc0012D17 mRNA, complete cds.
GenBankHM0045201e-151HM004520.1 Zea mays auxin response factor 5 (ARF5) gene, complete cds.
GenBankJX4285171e-151JX428517.1 Zea mays subsp. mays clone pUT3116 ARF5 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959954.10.0auxin response factor 13
SwissprotQ7XSS91e-154ARFM_ORYSJ; Auxin response factor 13
TrEMBLK3Z5L50.0K3Z5L5_SETIT; Auxin response factor
STRINGSi021833m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.16e-87auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]