PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G004800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 463aa    MW: 49459.7 Da    PI: 9.2309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G004800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.7e-07212234223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +CpdCg+ F r+++L+ H++  H
  Sevir.3G004800.1.p 212 PCPDCGEIFVRQESLQLHQSIrH 234
                         7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-4210230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.141211239IPR007087Zinc finger, C2H2
PROSITE patternPS000280211234IPR007087Zinc finger, C2H2
SuperFamilySSF563995.56E-20236283No hitNo description
Gene3DG3DSA:3.90.228.103.9E-13238459IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563995.56E-20310459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVEPGRSAAA REANTKKSST STGAAMKKKL MSKKPEKEKD GSGGCRTTRK QSSHCREPES  60
PSYRLALKSI FSCRNSQQQP DSGSRSSNKL GCSAPSICKL KDSDSSQRQR VAQRPAADET  120
AGEPCKRRAS VSGGSERRVK KPLSEVSSVS KQLQLQRGGS SLSSSSSSGG GSFRAGMQLR  180
RLSGCYECHM VVDPVSGSGS GSSSMRATTV CPCPDCGEIF VRQESLQLHQ SIRHAVSELG  240
ADDTSRNIIE IIFQSSWLKK QSPVCKVERI LKVHNTARTL ARFEEYRDAV KAKAAAQQQQ  300
QPAAKTTKHP RCTADGNELL RFHCATLACE LGLNGATHLC SSSGGGGCGA CAIIRDGFKI  360
NNAGDGGGVR TMATSGRAHD AVAGAPLDQE EEERRCRAML VCRVIAGRVK RPTQLGEEEE  420
ASSEEFDSVA ASAGVYSNLE ELQVFNPRAI LPCFVVVYKA AY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G004800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959963.10.0uncharacterized protein LOC101760650
TrEMBLK3ZET10.0K3ZET1_SETIT; Uncharacterized protein
STRINGSi025079m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.15e-80C2H2-like zinc finger protein