PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G029700.4.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 234aa MW: 25473.6 Da PI: 7.1468

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G029700.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4.1e-33	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHerFve+v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+ Sevir.3G029700.4.p 41 KTRIRWTQDLHERFVECVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 95 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.008	38	98	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-18	39	95	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-30	40	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	41	96	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-9	45	94	IPR001005	SANT/Myb domain
Pfam	PF14379	7.2E-23	128	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MESPGMQSPI ENTLSRSCSI GAPASHTGNV VAAAGHGAPS KTRIRWTQDL HERFVECVNQ 60 LGGADKATPK GILKLMNSDG LTIYHIKSHL QKYRIAKYMP ASTSSEGKQE KRAAGNDAQN 120 LDPSTGSQIT EALRVQVDVQ RRLHEQLEIQ RNLQMRIEAQ GKKLQKMFEE QLKASRTVME 180 PREELQLQDA GGIGAAAFPG VSEQEGEDAF DDVQLLSVAS SGYNDARFPS KIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-23	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G029700.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068513	1e-145	BT068513.1 Zea mays full-length cDNA clone ZM_BFb0272J03 mRNA, complete cds.
GenBank	EU957486	1e-145	EU957486.1 Zea mays clone 1594418 transfactor mRNA, complete cds.
GenBank	KJ726831	1e-145	KJ726831.1 Zea mays clone pUT3371 G2-like transcription factor (GLK52) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960202.1	1e-170	uncharacterized protein LOC101784276
Refseq	XP_004960204.1	1e-170	uncharacterized protein LOC101784276
Swissprot	Q0WVU3	4e-64	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	K3Z6D0	1e-169	K3Z6D0_SETIT; Uncharacterized protein
STRING	Si022099m	1e-169	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G029700.4.p