PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G045500.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 395aa    MW: 42129.4 Da    PI: 6.9435
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G045500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.8e-17164213155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k +g
  Sevir.3G045500.3.p 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDKAAIKCNG 213
                         78*******************......55**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-16164222IPR016177DNA-binding domain
PfamPF008476.4E-9164213IPR001471AP2/ERF domain
CDDcd000183.58E-13165223No hitNo description
PROSITE profilePS5103217.543165221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17165221IPR001471AP2/ERF domain
SMARTSM003809.6E-33165227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MELDLNVAEV APEKPAAMAA SDSGSSESSV LNAEASGGGA APAAEGSSST PPPRAVLEFS  60
ILRIESDAAG ADDDDDATPS PPRHHHHHQQ QPQLITRELF PAVAGPPPQH WADLGFFRAA  120
EPPRPQPDIR ILPHPHPHAT PPAPPPVQPQ AAKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDKAAIK CNGREAVTNF EPSTYDGELL TEVATEGADV  240
DLNLSISQPS SQSPKRDKNS LGLQLHHGSF EGSELKRTKI DTPSELAGRP HRFPLMTEHP  300
PIWPAQSHPF FTNNEGASRD INRRPEGGTG SGVPSWAWKM TAPPPTLPLP LFSSSSSSAA  360
ASSGFSNTAT TAAPATPSAS PRFDPPSSSS HHHR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G045500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2676411e-139KM267641.1 Dendrocalamus latiflorus transcription factor AP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806428.11e-103floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC31e-77AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A368QBQ41e-109A0A368QBQ4_SETIT; Uncharacterized protein
STRINGSi025305m1e-108(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.28e-22AP2 family protein