PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G049500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 341aa    MW: 38154.3 Da    PI: 6.0076
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G049500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.36.5e-2163130168
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                         +W++ e+ a +++r e+++++ ++k++k+lWe+vs++++ +gf r+p qCk+kw+nl +r+k +++ +
  Sevir.3G049500.1.p  63 QWSHAETAAFLAVRAELDHSFLTTKRNKALWEAVSARLQGQGFARTPDQCKSKWKNLVTRFKGTEAAA 130
                         7*************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004760122IPR001005SANT/Myb domain
CDDcd122033.03E-1962127No hitNo description
PfamPF138375.4E-1663128No hitNo description
Gene3DG3DSA:1.10.10.602.6E-463121IPR009057Homeodomain-like
PROSITE profilePS500907.65464120IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDPFHHLNTS FSNPYHPLLS PSPPHHPHFP PLPPPPPPPL PPPADPAPQL QPSASLERER  60
LPQWSHAETA AFLAVRAELD HSFLTTKRNK ALWEAVSARL QGQGFARTPD QCKSKWKNLV  120
TRFKGTEAAA AAAAHPPPDA DPASASAAAA QQARQFPFHD EMRRIFDARV ERAQALERKR  180
AKGKDVRTED DEGGGEGEDD DDEEEELEAE VGEDEAGSRV ATEARGGGGA KKRRRKQAAS  240
AARDRSADQG EVEAMLREFM RRQVEMEERW MEAAEAREAE RRAREEEWRN AMVALGEERL  300
ALVRRWRERE DAWRARAEER EERRHQLVAA LLAKLGGDSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235KKRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G049500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9463424e-95EU946342.1 Zea mays clone 305005 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680762.11e-117trihelix transcription factor GT-3b-like
TrEMBLA0A368QDJ51e-115A0A368QDJ5_SETIT; Uncharacterized protein
STRINGORUFI05G02060.11e-104(Oryza rufipogon)
STRINGOS05T0128000-001e-104(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-28Trihelix family protein