PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G082500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 220aa    MW: 23032.3 Da    PI: 6.2482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G082500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000255375123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C++ F++   L  H++ H
  Sevir.3G082500.1.p 53 YECVFCKRGFTTAQALGGHMNIH 75
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.4E-65179No hitNo description
PROSITE profilePS5015710.995380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDSGSNMESK AASGDEAAAM TTSPGPESEA VAGEEEAAVS PPPAAAASPR PYYECVFCKR  60
GFTTAQALGG HMNIHRRDRA KPARDSPAGI TSVSRNVECY NKYRHLASSS SYPLPAQSSS  120
PIPVGAGSSF GMYYVSSGVA AAAAAARLDA EDGSPSSVSP RELTLFGEAK RDQDLHLGLG  180
RQEHGSRTTE GGGSERQQSG EPPERELDLE LRLGRRPRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G082500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454771e-41AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149611e-41AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963474.11e-157transcriptional regulator SUPERMAN
TrEMBLK3ZES11e-155K3ZES1_SETIT; Uncharacterized protein
STRINGSi025069m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.14e-15C2H2 family protein