PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G093400.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 400aa MW: 42363.7 Da PI: 5.6671

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G093400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.6	1.2e-23	310	359	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+dl++yF+lp+++AAk+Lgvc+TvLK + R+++++RWPhRkiks+ Sevir.3G093400.1.p 310 SNLQLSDLARYFHLPMTEAAKHLGVCATVLKTTSRRFNVPRWPHRKIKSI 359 79**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.483	299	381	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-21	311	359	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MADGHGEGAA WEGPYDPFLM QDDFDDVMYL LDMAAVVLDP PPLAAQAQNV AAGPSPSGDN 60 NLLECPAKSN NDSVGNSAPT HNAGVTTGSP SRAQDVGAST SATASTSSPA ATHQNALDCT 120 GCQLLREVLH SNGFEATKLS IHGAAGVFYH ATLQVYRINS EGMATSLTHQ SNIDFRCRDY 180 EWVKRYLTGY AQQRAGGGYT VIHDSVSAFH DALCTRMSYG GGNVEGGDDR CEGEIMAAAA 240 VENGGGDHQH QELAGAADVA AHPPVEQGDA PAAAAAAGPS EPSADNEQEQ REVRPVGGRS 300 ALAIQRERAS NLQLSDLARY FHLPMTEAAK HLGVCATVLK TTSRRFNVPR WPHRKIKSID 360 NHVAKLRRSG GNGGAAAMSE MERLTESRRK IYADLVERE*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MADGHGEGAA WEGPYDPFLM QDDFDDVMYL LDMAAVVLDP PPLAAQAQNV AAGPSPSGDN  60
NLLECPAKSN NDSVGNSAPT HNAGVTTGSP SRAQDVGAST SATASTSSPA ATHQNALDCT  120
GCQLLREVLH SNGFEATKLS IHGAAGVFYH ATLQVYRINS EGMATSLTHQ SNIDFRCRDY  180
EWVKRYLTGY AQQRAGGGYT VIHDSVSAFH DALCTRMSYG GGNVEGGDDR CEGEIMAAAA  240
VENGGGDHQH QELAGAADVA AHPPVEQGDA PAAAAAAGPS EPSADNEQEQ REVRPVGGRS  300
ALAIQRERAS NLQLSDLARY FHLPMTEAAK HLGVCATVLK TTSRRFNVPR WPHRKIKSID  360
NHVAKLRRSG GNGGAAAMSE MERLTESRRK IYADLVERE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G093400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321666.1	1e-111	uncharacterized protein LOC8084238
TrEMBL	A0A368QD38	0.0	A0A368QD38_SETIT; Uncharacterized protein
STRING	Si025242m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sevir.3G093400.1.p