PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G107200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 237aa    MW: 25115.5 Da    PI: 10.0489
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G107200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.43.1e-119319034128
                 NAM  34 ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevlskkgelvglkktLvfykg.rapkgektd 120
                         i + d +++  ++L  + ++++ke +fF++ + +  +g++++   t  g W+  +t  + +    ++e+ + kk L f+ g    k e+t 
  Sevir.3G107200.1.p  93 ILDDDPLSASSQELL-ERNGHKKEAFFFVEGQPRCGKGTQQKGtCTGGGWWEgqKTCAEGDTSPDSSEAAWRKKALKFHCGsGGGKKESTG 182
                         556666677777775.44567889*************99999868889999844555666776669999**********6634455679** PP

                 NAM 121 Wvmheyrl 128
                         Wvm ey++
  Sevir.3G107200.1.p 183 WVMYEYAV 190
                         ******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.27859214IPR003441NAC domain
SuperFamilySSF1019412.62E-1566194IPR003441NAC domain
PfamPF023652.2E-773189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MASAAGMKEK KMSRSTFNGS KGTRVWAPSA GARPAPSATQ APACVNPKQA IASPIAQEQE  60
RAKRSAMAAI ELPPGILFAP EDKVVLLPAD GLILDDDPLS ASSQELLERN GHKKEAFFFV  120
EGQPRCGKGT QQKGTCTGGG WWEGQKTCAE GDTSPDSSEA AWRKKALKFH CGSGGGKKES  180
TGWVMYEYAV NPTPPPLGGS GPIAHIRLSS YDRKQSRGSL ARRPFSSVHR FGGIFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G107200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438091.15e-53uncharacterized protein LOC8065510
TrEMBLA0A368QDL41e-123A0A368QDL4_SETIT; Uncharacterized protein
STRINGSi025175m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137