PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G114900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 323aa    MW: 35427.2 Da    PI: 9.0274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G114900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11145191455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h  +Er+RR+++ + f  L +++P +     +K +K++ L  ++eY+k+L+
  Sevir.3G114900.1.p 145 QHVVAERKRREKMQQQFVALATIVPDL-----TKTDKISLLGSTIEYVKQLE 191
                         5999**********************9.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.354141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-15143207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-10143195No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16144202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9145191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-12147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDGLNQWHAH PDPEDEPAYM YQRQEEYAMM QGMQQQYTLP PAMVPPPIAG PSSSRPPHPR  60
HSSTSFRGGF GVPPALPSLP FGEVAVKNDP GQPSSSSHRI LSFGGQLPGT IDISGGDWPD  120
GIEAALQLPA PERRSRAHFW NTQKQHVVAE RKRREKMQQQ FVALATIVPD LTKTDKISLL  180
GSTIEYVKQL EEKVKTLKGQ SARRRMSKPT VFESKYHIST DGSDTSGSSE SAFSAGGFSP  240
TVEARIHGDT VLLRIWCKDR KGVLVMLISE LEKQGLSIIN TSVLPFTDSC LNITITAKIG  300
ERFSTTVELV TKLTTALRGF ST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154ERKRRE
2150155RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G114900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963526.10.0transcription factor bHLH19
TrEMBLA0A368QFR60.0A0A368QFR6_SETIT; Uncharacterized protein
STRINGSi025088m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-30bHLH family protein