PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G135500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 94aa    MW: 10344.6 Da    PI: 9.5614
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G135500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.9e-09450245
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        g WT+   +++ +a + +  +   +W++Iar+mg  +++ +++ ++ 
  Sevir.3G135500.1.p  4 GGWTQRQNKQFECALAVYDREtpdRWHKIARYMGGAKSADEVRRHFE 50
                        67*****************88*************889********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.319153IPR017877Myb-like domain
SMARTSM007174.5E-6255IPR001005SANT/Myb domain
SuperFamilySSF466894.91E-11460IPR009057Homeodomain-like
PfamPF002492.7E-6450IPR001005SANT/Myb domain
CDDcd001675.22E-7653No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASGGWTQRQ NKQFECALAV YDRETPDRWH KIARYMGGAK SADEVRRHFE HLVADVAQIE  60
AGRVPFPRYD AGAGAGLDTA AAASRSSKYL KFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-216741178RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G135500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282462e-84KJ728246.1 Zea mays clone pUT6523 MYB-related transcription factor (MYBR57) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961115.14e-63protein RADIALIS-like 4
TrEMBLA0A368QEL28e-62A0A368QEL2_SETIT; Uncharacterized protein
STRINGPavir.J03074.1.p2e-44(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-26RAD-like 6