PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G144900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 234aa    MW: 23745.8 Da    PI: 8.3068
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G144900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20111145135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Sevir.3G144900.1.p 111 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 145
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.417105141IPR000679Zinc finger, GATA-type
SMARTSM004014.6E-20105157IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-14106145No hitNo description
Gene3DG3DSA:3.30.50.102.6E-17109145IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.08E-13110142No hitNo description
PROSITE patternPS003440111136IPR000679Zinc finger, GATA-type
PfamPF003205.2E-18111145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAVVEMALCA CGRFYAGDGC GGRCAGAAAA SSALSMLFPV AVEQCYYSKE DDRSPYVGGG  60
AVDCTLSLGT PSTRRAEAGG RARAAGGGGG GGAAPSCKES ADRGSPPARR CANCDTTSTP  120
LWRNGPRGPK SLCNACGIRY KKEERRAAAA VAPAPAPQDG SYACGGYARQ PPPPQWGCYG  180
PVAAAKSASF GMYGGGDVVD AAADGPCLSW MLNVMPSSPA FAVRERPTLF QYY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G144900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681231.11e-118GATA transcription factor 15
SwissprotQ9ZPX03e-30GAT20_ARATH; GATA transcription factor 20
TrEMBLK3ZCD91e-117K3ZCD9_SETIT; Uncharacterized protein
STRINGSi024214m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.19e-26GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]