PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G179100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 385aa    MW: 39457.4 Da    PI: 5.8126
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G179100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18256290135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Sevir.3G179100.1.p 256 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 290
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.107.9E-15249287IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.387250286IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-17250300IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-15252313No hitNo description
CDDcd002022.30E-13255302No hitNo description
PfamPF003207.7E-16256290IPR000679Zinc finger, GATA-type
PROSITE patternPS003440256281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEVAAECAGG ARVKKEADLF LVDDLLDLPC DEEEEVQEAV VEEGEGEGGK AGVCGSGAGG  60
EEGAAGNASN DSSTVTVLDS CSNSLSGLAD GDFSGGLVEP YDQLAELEWL SNYMGEDNFP  120
TEDLKKLQLI TGIPPASSSA AATASVPAPA AAAAPPAGGV LPPEAPVPGK ARSKRSRIAP  180
CSWASRLLVL PPPPASPPSP ASAAISPSES GTAAPAFPAK KPSKPAKKKE LLTTPAPNAA  240
AAAAAAAASA GEGRRCLHCE TDKTPQWRTG PLGPKTLCNA CGVRYKSGRL VPEYRPAASP  300
TFVVSKHSNS HRKVLELRRQ KEAHLHPHHQ YQPQPQAMGH VGAGAAGGLM HAPSPLLFDG  360
PTGPLIGDDF LIHNRIGPDF RQLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G179100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961467.11e-165GATA transcription factor 12
TrEMBLA0A1E5VH411e-178A0A1E5VH41_9POAL; GATA transcription factor 9
STRINGPavir.J33978.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-49GATA transcription factor 12