PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G183400.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 580aa    MW: 64062.8 Da    PI: 8.1127
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G183400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.1e-2432133199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d++g +W++++iyr++++r++lt+GW++F + ++L +gD v+F  
  Sevir.3G183400.2.p  32 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyeQLRP--SQELIAKDLHGMKWRFRHIYRGQPRRHLLTTGWSSFINKKKLVSGDAVLFL- 119
                         99****************************9866664..459************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++el+++v+r+
  Sevir.3G183400.2.p 120 -RGNDGELRLGVRRA 133
                         .4489999****996 PP
2Auxin_resp103.33.1e-34158238182
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                         +a++++++s+F++++nPr+++seF+v++ k++k l+ ++s GmRfk+ fe+ed+++r+  G+++g+s++dp+rWp+SkWr+L
  Sevir.3G183400.2.p 158 VASSLENRSIFHICFNPRTGASEFIVSYGKFLKGLNYPFSTGMRFKVGFENEDANQRS-HGLISGISEVDPIRWPGSKWRCL 238
                         578899*************************************************999.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-4326169IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-3829134IPR015300DNA-binding pseudobarrel domain
CDDcd100179.15E-2230132No hitNo description
PROSITE profilePS5086313.0732134IPR003340B3 DNA binding domain
PfamPF023621.0E-2132133IPR003340B3 DNA binding domain
SMARTSM010193.0E-2332134IPR003340B3 DNA binding domain
PfamPF065073.3E-28159238IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MFGRNNHDRE TEVNCEMEDG DGGKKLRTSH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP  60
LDYEQLRPSQ ELIAKDLHGM KWRFRHIYRG QPRRHLLTTG WSSFINKKKL VSGDAVLFLR  120
GNDGELRLGV RRAVPLKNEL LLEAVNSTNS KLRTLSAVAS SLENRSIFHI CFNPRTGASE  180
FIVSYGKFLK GLNYPFSTGM RFKVGFENED ANQRSHGLIS GISEVDPIRW PGSKWRCLLV  240
KWDDDTKCNH RNRVSPWDIE GISSSISMTN CLSSVSKRTK LCFPQGDLDA PILDGNGHPD  300
SMETECFHRV LQGQELVRTR THGVAWSHSS DTPKCQGSCE RRFSADVWNC KMNDAMSGFR  360
HGNANGFAYQ PLGFSESVRF SEVLQGQEMS QAVPSFLGAA LDARVQNGRI GSFDYVHRST  420
VSQGYPLQQF NLPATEVHSP SSVLMVNQTT ALQPELEGMT NREEANGSRY APIAVRREAE  480
RWPSTQQPRA SGNGSEVFNT TGASAPATAA KPVDRGVGRS SCRLFGFSLT DKILGAEEDG  540
VKEGNYEADH QTPRALDLFG HSQSAPSALH ALCAAPLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A6e-7728264120357Auxin response factor 1
4ldy_B6e-7728264120357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G183400.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961506.10.0auxin response factor 14
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A368QGL30.0A0A368QGL3_SETIT; Auxin response factor
STRINGSi021589m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-124ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]