PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G193500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 269aa    MW: 28485.6 Da    PI: 6.0854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G193500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000132322671252
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                         R +++ +++  L++l+ +      +K + a++L +A+eYI+
  Sevir.3G193500.2.p 232 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIS 267
                         677888999*******998.....8***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.569220268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-7230266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.22E-4230266No hitNo description
Gene3DG3DSA:4.10.280.102.7E-5234266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MADEWWSSVR AGDGASACST DQDAAEPGAT SATSTDYFRS GLHVDAAASP PSSFLADPPH  60
MADWTQAYVG GGRAAAEATA SFNALLRLHG DDAGRHFLLD QQPDVVDGAA PLAPEAAASR  120
SASLCAENQY SGYGDVPAAP MTTTKPFSQQ HFVSGFFASS TRNFSDVASE PRPMTTKPLL  180
LQALEQKAFR SHKEHVQDAC YSATRRSVPD SPAAAKKLRI ATPSPMPTFK VRKEKLGDRI  240
TALQQLVSPF GKTDTASVLH EAIEYISP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G193500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695461e-60BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds.
GenBankCT8378341e-60CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961600.10.0transcription factor bHLH112
TrEMBLK3Z7M80.0K3Z7M8_SETIT; Uncharacterized protein
STRINGSi022548m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.26e-26bHLH family protein