PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G203000.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 305aa MW: 32825.9 Da PI: 5.9418

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G203000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.2	1.2e-15	254	297	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ Sevir.3G203000.3.p 254 RRQKRMIKNRESAARSRARKQAYTNELENKVSLLEEENERLKKQ 297 69***************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.5E-15	249	297	No hit	No description
SMART	SM00338	9.6E-9	250	301	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.542	252	297	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.88E-11	254	299	No hit	No description
Pfam	PF00170	6.0E-14	254	297	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.17E-26	254	298	No hit	No description
PROSITE pattern	PS00036	0	257	272	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MASQAGGGGG GDAGSAQRGQ IQGLARQGSL YNLTLDEVQN HLGEPLLSMN FDDLLKTVFP 60 DGVDPNGPVI GKPDPASSLQ RQGSIVMPPQ LSKKTVDEVW KGIQDGPETS AREGGRHRRE 120 RQPTLGEMTL EDFLVKAGVV PEGLMRDSDD LLVNMDTVGS NVMVAGTSSL NPGAQLLQQY 180 QQQALESQQP SLVGSYMAGQ LAPQPLSVAT GAMLDSMYSD GQITSPTLGA FSDPQTPGRK 240 RGVSGEVVDK VIERRQKRMI KNRESAARSR ARKQAYTNEL ENKVSLLEEE NERLKKQKPS 300 TMRL*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G203000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061345	0.0	BT061345.1 Zea mays full-length cDNA clone ZM_BFb0137L05 mRNA, complete cds.
GenBank	EU966389	0.0	EU966389.1 Zea mays clone 294076 bZIP transcription factor mRNA, complete cds.
GenBank	KJ726913	0.0	KJ726913.1 Zea mays clone pUT3458 bZIP transcription factor (bZIP96) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680575.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X4
Swissprot	Q9LES3	4e-67	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	K3Z7W9	0.0	K3Z7W9_SETIT; Uncharacterized protein
STRING	Si022639m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	6e-68	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Sevir.3G203000.3.p

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]