PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G212900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 239aa    MW: 25089.7 Da    PI: 5.5788
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G212900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-1962111356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr+p   + + +r++lg+f+t+ +Aa a+++a+ +++g+
  Sevir.3G212900.1.p  62 YRGVRQRR-WGKWVAEIREP---N-CgRRHWLGTFDTPVDAALAYDRAAVAYHGN 111
                         9****998.**********8...3.57*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-2961119IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2261119IPR016177DNA-binding domain
SMARTSM003801.8E-3461124IPR001471AP2/ERF domain
PROSITE profilePS5103221.4761118IPR001471AP2/ERF domain
CDDcd000185.95E-2961120No hitNo description
PfamPF008475.6E-1262110IPR001471AP2/ERF domain
PRINTSPR003678.7E-96273IPR001471AP2/ERF domain
PRINTSPR003678.7E-984100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGVGLGSKEM GRAPAAVPTS SGTGTQQARA NGGANGTPGA GRSRSVSAQR GVGGPDNTRH  60
NYRGVRQRRW GKWVAEIREP NCGRRHWLGT FDTPVDAALA YDRAAVAYHG NLARLNFPAD  120
NAAAVTIATA APAQRQPSSC APATTADVFE EHEVKPLVAV SQGGGGAETV SQQQQQQGAS  180
WLSPELLFDD DPNDIAMYID FDAVAHMVPC YPGIKIEDCQ PDGFDGDAIH SPLWPLGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1661118563ATERF1
3gcc_A1e-1661118563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G212900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1359241e-35AC135924.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0486C01, complete sequence.
GenBankAK1025591e-35AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence.
GenBankAK1038221e-35AK103822.1 Oryza sativa Japonica Group cDNA clone:J033147H24, full insert sequence.
GenBankAK1098551e-35AK109855.1 Oryza sativa Japonica Group cDNA clone:002-148-G01, full insert sequence.
GenBankAP0149611e-35AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-35CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8342421e-35CT834242.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961770.11e-176dehydration-responsive element-binding protein 2D
SwissprotQ65WX11e-32DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D
TrEMBLA0A368QHK41e-174A0A368QHK4_SETIT; Uncharacterized protein
STRINGSi024427m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-20ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]