PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G218700.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 146aa    MW: 15788 Da    PI: 5.2896
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G218700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.67.5e-5831124194
               NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                         vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl+kyr
  Sevir.3G218700.4.p  31 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYR 121
                         69***************************************************************************************** PP

               NF-YB  92 ele 94 
                         e+e
  Sevir.3G218700.4.p 122 EME 124
                         *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-5330124IPR009072Histone-fold
SuperFamilySSF471132.02E-3934124IPR009072Histone-fold
PfamPF008081.4E-2837101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.8E-236583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.8E-2384102No hitNo description
PRINTSPR006157.8E-23103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MADAPASPGG GGGSHESGSP RGGGGGGGGG VREQDRFLPI ANISRIMKKA IPANGKIAKD  60
AKETVQECVS EFISFITSEA SDKCQREKRK TINGDDLLWA MATLGFEDYI EPLKVYLQKY  120
REMEVCDIEL FSLCCRYLLL MLNYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B6e-4930122294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A6e-4930122294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G218700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0410971e-153BT041097.1 Zea mays full-length cDNA clone ZM_BFc0174L17 mRNA, complete cds.
GenBankKJ7283391e-153KJ728339.1 Zea mays clone pUT6620 CCAAT-DR1 transcription factor (CADR15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806249.14e-87nuclear transcription factor Y subunit B
RefseqXP_025806250.14e-87nuclear transcription factor Y subunit B
SwissprotP252091e-64NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A2T7ECR38e-86A0A2T7ECR3_9POAL; Uncharacterized protein
TrEMBLA0A2T8KJ819e-86A0A2T8KJ81_9POAL; Uncharacterized protein
STRINGSi023400m2e-86(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-63nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]