PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G229900.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 510aa MW: 56518.4 Da PI: 6.268

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G229900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.7	1.8e-11	197	226	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Sevir.3G229900.2.p 197 AKTERRLAQNREAARKSRLRKKAYVQQLET 226 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-6	194	270	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.312	196	239	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-8	197	227	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-7	198	227	No hit	No description
SuperFamily	SSF57959	4.58E-7	198	240	No hit	No description
PROSITE pattern	PS00036	0	201	216	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.9E-28	278	353	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MAQGEESSWW VTSDHGRALP FSQALACGIQ SHAPAARPAN FLELQPSATA YFGELEEALI 60 HGSCTSIDPS MIGRDVDTEC NKTGYLAARP PTLEIFPSWP MSHLQQPYSG NSHSVGSTSE 120 SSSGQNAMPQ AELVSPGSMR ADSGQQQEVL MVTVDDYNYE QGLGVAATTA PIFQQHTESQ 180 DKRKQGSTRK DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELQG 240 ARSQGLFPGG GSASGDMNSG ALMFDMEYAR WLEDDSKHMT QLQGILQAQN IDANLGTIVE 300 ECMRHYDELF HLRAMLARSD VFHLMTGLWA TTAERCFLWM GGFRPSEILK MLIPQLDPLT 360 EQQLLGMCNL QRSSEQTEEA LVQGLQQLHK SLADAVGASP LSDGANVANY TALMALALDR 420 LDTLESFYRQ ADNLRQQTLH HMRRLLTTRQ TARCFLSIGE YHRRLRALSS VWASRPLESF 480 VAAAENVSPT GTAEQAIHHP YHQSQFSGF*

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MAQGEESSWW VTSDHGRALP FSQALACGIQ SHAPAARPAN FLELQPSATA YFGELEEALI  60
HGSCTSIDPS MIGRDVDTEC NKTGYLAARP PTLEIFPSWP MSHLQQPYSG NSHSVGSTSE  120
SSSGQNAMPQ AELVSPGSMR ADSGQQQEVL MVTVDDYNYE QGLGVAATTA PIFQQHTESQ  180
DKRKQGSTRK DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELQG  240
ARSQGLFPGG GSASGDMNSG ALMFDMEYAR WLEDDSKHMT QLQGILQAQN IDANLGTIVE  300
ECMRHYDELF HLRAMLARSD VFHLMTGLWA TTAERCFLWM GGFRPSEILK MLIPQLDPLT  360
EQQLLGMCNL QRSSEQTEEA LVQGLQQLHK SLADAVGASP LSDGANVANY TALMALALDR  420
LDTLESFYRQ ADNLRQQTLH HMRRLLTTRQ TARCFLSIGE YHRRLRALSS VWASRPLESF  480
VAAAENVSPT GTAEQAIHHP YHQSQFSGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G229900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680635.1	0.0	transcription factor TGAL5 isoform X2
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A368QJP3	0.0	A0A368QJP3_SETIT; Uncharacterized protein
STRING	Si022106m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-129	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G229900.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]