PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G310100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 145aa    MW: 16331.7 Da    PI: 4.9892
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G310100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.14.1e-07444949
                        HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         q++fs R n+++  A+ LS   +a + v++fs+t + + y
  Sevir.3G310100.1.p  4 SQTSFSERMNTLFSMAKDLSQEFGAHITVVMFSHTSEPKSY 44
                        69********************************9876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.096148IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-8557IPR002100Transcription factor, MADS-box
PfamPF003192.4E-8544IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MAQSQTSFSE RMNTLFSMAK DLSQEFGAHI TVVMFSHTSE PKSYRAPTTD SILCTYLLEI  60
HSSPYPACSK IVGKAAARVD GMKQEVEETT FLVETSVGKQ NWWEVDMEAL RVDELLVFVR  120
ALEVLRTCQN LDVMESSRKE KMQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G310100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967110.16e-61uncharacterized protein LOC101775407
TrEMBLK3Y2416e-71K3Y241_SETIT; Uncharacterized protein
STRINGSi008260m9e-72(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7989512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-08AGAMOUS-like 61