PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G334900.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 755aa    MW: 83857.9 Da    PI: 6.8223
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G334900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.2e-2460161199
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   +
  Sevir.3G334900.2.p  60 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--R 148
                         99*****************************555555669************************************************..4 PP

                         SSEE..EEEEE-S CS
                  B3  87 rsefelvvkvfrk 99 
                          +++el+v+v+r+
  Sevir.3G334900.2.p 149 GENGELRVGVRRA 161
                         49999*****985 PP
2Auxin_resp110.22.1e-36186268183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha++t+s+F+++Y+Pr+s++eFvv+++++ ++lk+++++GmRfkm+fe+e+++e++++Gt+vg+ ++dp+ W +SkWrsLk
  Sevir.3G334900.2.p 186 AWHAVNTGSMFTIYYKPRTSPAEFVVSRDRYYESLKQNYTIGMRFKMRFEGEEAAEQKFTGTIVGIGASDPSGWADSKWRSLK 268
                         89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-4157189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-4058175IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-2158160No hitNo description
PROSITE profilePS5086311.7360162IPR003340B3 DNA binding domain
PfamPF023629.5E-2260161IPR003340B3 DNA binding domain
SMARTSM010197.7E-2360162IPR003340B3 DNA binding domain
PfamPF065073.1E-33186268IPR010525Auxin response factor
PROSITE profilePS5174522.5626708IPR000270PB1 domain
SuperFamilySSF542772.65E-9629702No hitNo description
PfamPF023094.7E-6673710IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MNIELKAEPD TDEVYAQLTL LPDKKRDENT TTTVESDAAE DEVVPVAPPA TNEQLLIHSF  60
CKTLTASDTS THGGFSVLRR HADECLPPLD MSQHPPNQEL VAKDLHGVEW RFRHIFRGQP  120
RRHLLQSGWS VFVSAKRLVA GDAFIFLRGE NGELRVGVRR ALRHQTTIPS SVISSHSMHL  180
GVLATAWHAV NTGSMFTIYY KPRTSPAEFV VSRDRYYESL KQNYTIGMRF KMRFEGEEAA  240
EQKFTGTIVG IGASDPSGWA DSKWRSLKVR WDEASAVLRP ERVSPWQIEP AAVSPSPVNP  300
LPLRFKRSRS NVNASPSDMP TVTREVASKV MADSQQNSLP RALHSQGRAQ LTSRFRDSSD  360
LKSAQDLTMW SSGIEQERNN IAAQTKLSLE GWTQTRRPEG YNQLSSAFQP LKDAQNPLCS  420
FPSQISGNHS NTWDTVDAHY PTQQANHNML PGTWSLMPHN SGFMMNQQNY LSMPEAALPQ  480
RAEIAKFSGK SAFTSLQGHG IDRCCSGWIG HNRASSSLIN PQPLVIETDV QKTKGTSFKL  540
FGFPLGSPEK SEPLVSPPSV AYDGKLQTSP SQRNQLDIIE VDDYSDPSKT VKPLDGPQTD  600
SVRENNHPCP EATQNVQNKV QSSSTRSCKK VHKQGSALGR SIDLTKFTCY SELIAELDQM  660
FDFGGELSSP HKNWMVVFTD NEGDMMLVGD DPWNEFCSMV HKMFIYTREE VERMNPGALS  720
SRSEETLSDS LVRGSGSKEP RGGPSALSLN SENC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-140129078354Auxin response factor 1
4ldw_A1e-140129078354Auxin response factor 1
4ldw_B1e-140129078354Auxin response factor 1
4ldx_A1e-140129078354Auxin response factor 1
4ldx_B1e-140129078354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G334900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0665440.0BT066544.1 Zea mays full-length cDNA clone ZM_BFb0026K11 mRNA, complete cds.
GenBankJX4285050.0JX428505.1 Zea mays subsp. mays clone pUT3103 ARF28 ARF type transcription factor mRNA, partial cds.
GenBankKJ7268060.0KJ726806.1 Zea mays clone pUT3124 ARF transcription factor (ARF28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962662.10.0auxin response factor 24
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLK3Z3U80.0K3Z3U8_SETIT; Auxin response factor
STRINGSi021216m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]