PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G361200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 177aa MW: 18251.9 Da PI: 10.6168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G361200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00049	35	75	13	54
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+ + s f+eL +lP+ + ++++ s ei+ A +++L Sevir.3G361200.1.p 35 RRTVSSLFAELGAMLPNdL--PTNRPASREEIVDAAAARVRML 75 89999**********76..69999*****9998877776 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAGGGWLPLD LSLATAGAGT SASAGERRTG TRAHRRTVSS LFAELGAMLP NDLPTNRPAS 60 REEIVDAAAA RVRMLEEAAA VLETYRAVRG PPCPRPRPEV AVAVATVCFS ARLPAPTRPS 120 ALTRVLEAFH RRGVEVLVAT VARHGHGGGA AVVTVTATAA PSEVLELIRA DIAAIH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G361200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680863.1	1e-117	uncharacterized protein LOC111256704
TrEMBL	K3ZF25	1e-115	K3ZF25_SETIT; Uncharacterized protein
STRING	Si025174m	1e-116	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9141	19	31

Link Out ? help Back to Top
Phytozome	Sevir.3G361200.1.p