PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G370700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 218aa    MW: 24037.4 Da    PI: 5.3739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G370700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-091431821054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + RR+riN ++  L+el+P+      kK++ +++L +Av+Y+k L
  Sevir.3G370700.2.p 143 KMRRERINARLKILQELIPNG-----KKVDISTMLDEAVQYVKFL 182
                         89*****************98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-9128187No hitNo description
SuperFamilySSF474594.32E-13131197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-12131193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.005133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-8139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6143182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDMLTKALFR RSSTDMEAEC ASYWCSVDAF CEESVMIASL QSLLWSSSDV DLVPGLCSSN  60
VPYSLPGSSP FCINDNEKST LVSSSPNEVL DTLALAHGEK VVGSKRKAET DEEKNHGGEG  120
RTTPLAPRAR KQSKANSQSC YAKMRRERIN ARLKILQELI PNGKKVDIST MLDEAVQYVK  180
FLHMQIKLLS SDEMWMYAPL AYDSVNIGIP LCSSVQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G370700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700047.21e-159transcription factor bHLH54 isoform X2
TrEMBLA0A368QMU81e-158A0A368QMU8_SETIT; Uncharacterized protein
STRINGSi024550m1e-147(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-36bHLH family protein