PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G371200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 208aa    MW: 23096.2 Da    PI: 8.6944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G371200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.3e-11140184348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +WT++E+ l++ +   + g+ W++ +r+  + Rt+ q+ s++qky+
  Sevir.3G371200.1.p 140 KWTEDEHRLFLAGLPFYRGN-WNAMSREYLTSRTASQIASHYQKYR 184
                         8*****************99.************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717372573IPR001005SANT/Myb domain
PROSITE profilePS5129410.632133188IPR017930Myb domain
SuperFamilySSF466891.94E-11135188IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-11136186IPR006447Myb domain, plants
SMARTSM007177.3E-7137186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-8140185IPR009057Homeodomain-like
CDDcd001671.17E-4140183No hitNo description
PfamPF002494.2E-8140184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MHHDGYAAAA AAPPPALAAS PEPEQEPKWT RRDDKFLELL LFTRNTVSLR VASGIIGKTP  60
AQIHQRCTFM FAELSHVLES LEVLTPPVWD MEIAAMAVAA EEVVPEAVVP AAPPVAARKN  120
SAERAVGAGG GKRNKKAAEK WTEDEHRLFL AGLPFYRGNW NAMSREYLTS RTASQIASHY  180
QKYRNREKQR EHDNCKRASI HDITTTPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G371200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700129.11e-149transcription factor SRM1-like isoform X3
RefseqXP_022680626.11e-146LRR receptor-like serine/threonine-protein kinase EFR isoform X1
TrEMBLK4AKN91e-108K4AKN9_SETIT; Uncharacterized protein
STRINGSi039462m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.19e-16MYB family protein