PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G382600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 496aa    MW: 54888.3 Da    PI: 6.8112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G382600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05271293123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ Cgk  ++ ++L rH+r+H
  Sevir.3G382600.1.p 271 YQCKVCGKLLRSGYSLGRHMRLH 293
                         9*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.9E-5269295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.63E-10269293No hitNo description
PfamPF139121.4E-6270295IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.24271298IPR007087Zinc finger, C2H2
SMARTSM003550.01271293IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
SuperFamilySSF576674.63E-10339366No hitNo description
PROSITE profilePS501579.058344371IPR007087Zinc finger, C2H2
SMARTSM003550.15344366IPR015880Zinc finger, C2H2-like
PfamPF139127.6E-8344368IPR007087Zinc finger, C2H2
PROSITE patternPS000280346366IPR007087Zinc finger, C2H2
PfamPF139123.3E-6426450IPR007087Zinc finger, C2H2
SMARTSM003551427449IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995427454IPR007087Zinc finger, C2H2
PROSITE patternPS000280429449IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDIDEPRTPK LAGRALGGHM SCHRHAGMQQ RSTPCPPAIV VDVPVSLLGP SDEKSSLPCL  60
ETQWWHLSQE FSTNQSLRGN MRMHSEKKVM AKPNEEPAGL MEASANANGD HGHHEMLFSP  120
VKRKRSKRGM PALDSEMCAA DALLMLAKYS DKSYAYEDCC GGDNNDNIST PNLLKEVNLN  180
AFDQLVQSDE FTNNTRLKSD KNSAYEGFYE HTEQESSLNL AADVPRKMVL LNVFDHGLVD  240
GNAEFMKPEA DISVEEVKSG NLSVAVNIKR YQCKVCGKLL RSGYSLGRHM RLHCEKENSL  300
NLVADVPKEV LLDVDDEFMK PGAENSVEEL KSGDLSAAVN IKSYQCKVCG KLLRSGRALG  360
GHMTSHLQRG QENTSNLVAD VPKTEMLLNV FDHGLDVDAD FMKPGADISV EELQSSDLSA  420
SVNIKRHHCK VCGKLLGSGH ALGGHMRLHY VRKCNLHQGV ADCTNSTMME EQMQKLELKS  480
PIFYRRRPRS HWSGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G382600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681048.10.0uncharacterized protein LOC111256778
TrEMBLA0A368QMS20.0A0A368QMS2_SETIT; Uncharacterized protein
STRINGPavir.Ca02555.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.11e-10C2H2 family protein