PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G386500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 259aa    MW: 26704.1 Da    PI: 7.4732
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G386500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008899121123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cgk F++   L  H  +H
  Sevir.3G386500.1.p  99 HACSVCGKAFPSYQALGGHKASH 121
                         67**********99999998887 PP
2zf-C2H210.90.0015162181120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ Cgk F++   L  H 
  Sevir.3G386500.1.p 162 HECNVCGKAFPTGQALGGHK 181
                         78*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.48E-998121No hitNo description
PfamPF139123.4E-1399123IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.38599126IPR007087Zinc finger, C2H2
SMARTSM003550.04399121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SuperFamilySSF576673.48E-9157184No hitNo description
PfamPF139122.6E-13161186IPR007087Zinc finger, C2H2
SMARTSM003550.063162184IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388162184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-5162184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAVEAVLDAV VMPSPISSTP PDVVAATSSE EEASSTAREG ADGWAKRKRS RRRRQQLLQG  60
AMLPREPTEE EYLALCLVTM ASGRRDVAAP APPPPQELHA CSVCGKAFPS YQALGGHKAS  120
HRAKPPVSPA GSLIRDEDAK QHAAPAPAPA PSSSAEAKAS AHECNVCGKA FPTGQALGGH  180
KRCHYDGTIG SAAAPARSAS SSAATTRVSS TTTAAGGGFD LNLPALPEIP ERCAAAPEEE  240
EEVLSPIAFK KPRFMIPA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G386500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557421e-48EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963019.11e-131zinc finger protein 1
SwissprotQ424301e-44ZFP1_WHEAT; Zinc finger protein 1
TrEMBLK3Z8Z31e-129K3Z8Z3_SETIT; Uncharacterized protein
STRINGSi023013m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.28e-28zinc-finger protein 2