PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G388900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 327aa    MW: 37488.2 Da    PI: 10.2463
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G388900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-1726115199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+     +k+g +++p+kf++++   ++ s +l+le ++g+++ v++     +++ vl++GW +F+ a +Lk gD +vF+  ++s f 
  Sevir.3G388900.1.p  26 FFKVM--MGDFKNG-VTIPRKFVANIR--EHLSEELKLEAPDGKTYAVQV--ATEQNELVLRTGWPDFATAYELKFGDLLVFRNCKNSHF- 108
                         77888..5566666.********8886..458889***************..99999**************************5565666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v++f+ 
  Sevir.3G388900.1.p 109 -KVRLFDP 115
                         .8888875 PP
2B354.52.1e-172393231599
                         -EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                          l +  ++a+++   ++e++t++l+ +      +We  +  r k +ry+l++GW++Fv++n+Lk gD+++F+l+++ ++ ++ v+++rk
  Sevir.3G388900.1.p 239 FLEFAIDYATKYL--PRENQTMRLRRPGPskdDTWEAVF--RVKNRRYTLGRGWRHFVDDNKLKPGDICLFSLMKNtKKLTMDVHIIRK 323
                         4555555565553..556779999996555569******..999999***************************999*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-2122118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2123118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.23823116IPR003340B3 DNA binding domain
CDDcd100174.80E-1824114No hitNo description
PfamPF023624.8E-1526114IPR003340B3 DNA binding domain
SMARTSM010194.4E-1226116IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-21219323IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-20219323IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-14224322No hitNo description
PROSITE profilePS5086313.155225324IPR003340B3 DNA binding domain
SMARTSM010198.1E-7226324IPR003340B3 DNA binding domain
PfamPF023622.7E-15240323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MNKPSTVCKE CIAHHYWHHM DDQKRFFKVM MGDFKNGVTI PRKFVANIRE HLSEELKLEA  60
PDGKTYAVQV ATEQNELVLR TGWPDFATAY ELKFGDLLVF RNCKNSHFKV RLFDPSGCEK  120
ELSCVLMDGA PCVQERKVSH GDHTQSPTGK RMEIGSPSGS RKTSKMNPID SPSQRRGHVP  180
SARTKSPRHG VAKPPYILPR YTTLNDQQKN EVDKKVGAIE SKIPIYVATM CNSNTARAFL  240
EFAIDYATKY LPRENQTMRL RRPGPSKDDT WEAVFRVKNR RYTLGRGWRH FVDDNKLKPG  300
DICLFSLMKN TKKLTMDVHI IRKRSM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G388900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963037.10.0B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A368QMS70.0A0A368QMS7_SETIT; Uncharacterized protein
STRINGSi022802m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-23B3 family protein