PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G389200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 96aa    MW: 10984.5 Da    PI: 6.7817
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G389200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.3e-122795175
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75
                        ff v+   d   ++ l++pkkf+++ gg+   s  ++l+ ++g+++++++   k  ++ +l++GW  F++a +L+
  Sevir.3G389200.1.p 27 FFVVM--LDEDFKSGLIIPKKFVKNVGGQ--ISERIKLKVRDGETYDIEV--AKEHNELLLQSGWAVFASAYELE 95
                        56666..56666667********888888..66689999999********..*******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-132195IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-142395IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-122595No hitNo description
PROSITE profilePS508639.5592595IPR003340B3 DNA binding domain
PfamPF023626.5E-102795IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSTSSQNTIC KDCAANHYWH QMDKRRFFVV MLDEDFKSGL IIPKKFVKNV GGQISERIKL  60
KVRDGETYDI EVAKEHNELL LQSGWAVFAS AYELE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G389200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442423.27e-28B3 domain-containing protein LOC_Os12g40080
RefseqXP_004963037.14e-28B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT61e-28Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1Z5R7B72e-32A0A1Z5R7B7_SORBI; Uncharacterized protein
STRINGOMERI12G12100.12e-32(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-09B3 family protein