PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G389300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 399aa    MW: 45448.1 Da    PI: 8.52
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G389300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-173791799
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        ++pk+fa+++gg+   + +++le ++g+ ++vk+   + +++ v+++GW +F++  +Lk+ Df+vF++ g+s f  +v +f+ 
  Sevir.3G389300.1.p  3 TIPKRFANNIGGQ--IPEEVQLEVPNGKNYNVKV--AREQDALVMGSGWANFASVYDLKQEDFLVFTYCGKSHF--KVCIFDP 79
                        7******999988..6669***************..********************************999999..9999985 PP
2B337.63.8e-121772353392
                         -SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3  33 sktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         + t+tl + +g ++W ++l    + g+y l++GW +F ++ngL+egD+++F+ +++ +++ 
  Sevir.3G389300.1.p 177 NGTITLSHVDGsKTWAITL-GISTVGWYALSTGWLDFIQDNGLREGDICIFEPSKS-KGRV 235
                         337999998888*******.4555567*************************8764.4433 PP
3B348.12e-153093941199
                         HHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  11 lksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +ks+ + +  ++a+++   g++      ++l +  +   We ++ ++++++r  +++GW +Fv++n+Lk+gD+++F+l+++++ +++v+++
  Sevir.3G389300.1.p 309 GKSSSMGFCSEYAKKYlqgGYD-----SIILLHpNKTDIWEAEIEINNNRRR--IGRGWWQFVSDNELKVGDICLFQLMETKKLTMTVHII 392
                         4567788888999988864333.....3555552777*******88999888..9************************99********** PP

                         -S CS
                  B3  98 rk 99 
                         rk
  Sevir.3G389300.1.p 393 RK 394
                         98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.0E-6180IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098180IPR003340B3 DNA binding domain
CDDcd100171.30E-16378No hitNo description
Gene3DG3DSA:2.40.330.105.8E-19382IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-14378IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-19382IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0025157243IPR003340B3 DNA binding domain
CDDcd100179.39E-10157241No hitNo description
SuperFamilySSF1019368.44E-12169232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-12171232IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-9176238IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039179243IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-16291396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-17292397IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-12297393No hitNo description
SMARTSM010191.8E-10298395IPR003340B3 DNA binding domain
PROSITE profilePS5086312.055299395IPR003340B3 DNA binding domain
PfamPF023622.8E-14302395IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MQTIPKRFAN NIGGQIPEEV QLEVPNGKNY NVKVAREQDA LVMGSGWANF ASVYDLKQED  60
FLVFTYCGKS HFKVCIFDPS NCEKYFSCVV MDDTYEQDRS ISNDNTPTSF HMQSPTSKRS  120
ENFKEETNRF SFIEISEQKR KIDALEQKIR PQIPLYITAM DMTSVFWISV KHLLGKNGTI  180
TLSHVDGSKT WAITLGISTV GWYALSTGWL DFIQDNGLRE GDICIFEPSK SKGRVTLTFH  240
PLEICSKKAP GYAPSSRSPM HGVTKLAYII PRFTILSDKQ KCKIEDKVRA IRSPYDLFVL  300
IVKTSNVIGK SSSMGFCSEY AKKYLQGGYD SIILLHPNKT DIWEAEIEIN NNRRRIGRGW  360
WQFVSDNELK VGDICLFQLM ETKKLTMTVH IIRKQECT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G389300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ2QMT61e-107Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1Z5R6W61e-168A0A1Z5R6W6_SORBI; Uncharacterized protein
STRINGSb08g019887.11e-172(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-22B3 family protein