PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G390100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 371aa    MW: 39417 Da    PI: 8.1973
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G390100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31101154255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt+ LH++Fv+ave LGG+e+AtPk++le+m+vk+Ltl+hvkSHLQ+YR+
  Sevir.3G390100.1.p 101 PRMRWTTALHAHFVHAVELLGGHERATPKSVLEMMNVKDLTLAHVKSHLQMYRT 154
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-2899154IPR009057Homeodomain-like
SuperFamilySSF466892.51E-1599154IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-23101154IPR006447Myb domain, plants
PfamPF002491.3E-7102153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSTTTSRVTA TTATPDLSLH ISPPSPAAAA GEMQAAEPRL LLGLELDTAA PAAAKTDDAA  60
AQRHGGVHQV QQRLHQPNQT AHGLKKSSGG GGGGRRSARA PRMRWTTALH AHFVHAVELL  120
GGHERATPKS VLEMMNVKDL TLAHVKSHLQ MYRTVKGTDR SCIAGHGQAR DMVFLRRRGS  180
AGEVDGFDVF NNYAVNTTTI FNNNTPSSDE LALQPWPCRL RPAADRLLMT TATEQSQGLK  240
VGGQDNNHGQ GAVALHHLAG AEAREKVSSP QAPTPRDYAG SGGFHRPSPN NTSSSGDDTV  300
SSSEWPPLQQ DYGNDGGMMT VRVVASHAPP PSLEMSLGRQ GWQVEHQRVG VEFESSSPPA  360
ANELTLLKCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-16102156357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16102156357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16102156357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16102156357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G390100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1002031e-95FP100203.1 Phyllostachys edulis cDNA clone: bphylf053h02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963044.10.0uncharacterized protein LOC101780383
TrEMBLA0A368QN090.0A0A368QN09_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.21e-34G2-like family protein