PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G394000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 165aa    MW: 17708.8 Da    PI: 11.2797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G394000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-0548742455
                        HCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 24 rellPkaskapskKlsKaeiLekAveYIksLq 55
                        ++l+P +      K + a++L ++++YIksL+
  Sevir.3G394000.1.p 48 KQLVPGC-----DKCNQASTLDQTIQYIKSLK 74
                        5667766.....89****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.5E-74880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-74883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-44878No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDKKEKQQLP MAEQGIGTKQ QETRKTPGGG SPKRSHSHHG EARSLTGKQL VPGCDKCNQA  60
STLDQTIQYI KSLKHQVQAM CVGPARPAAA YPVVQPQHAP RGAAVAVPIM PAAPVVLAAA  120
PTMVPFRAMI QLPHYPAAAV PVMMPAAAAP PLIQWPQRRR RRLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G394000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699853.14e-42transcription factor APG isoform X1
RefseqXP_012699854.13e-42transcription factor APG isoform X2
TrEMBLK3ZDG51e-68K3ZDG5_SETIT; Uncharacterized protein
STRINGSi024601m2e-69(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-08phytochrome interacting factor 3