PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G401300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 412aa    MW: 43967.2 Da    PI: 5.0565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G401300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.12.7e-17263309455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Sevir.3G401300.1.p 263 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 309
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.58E-19256313No hitNo description
Gene3DG3DSA:4.10.280.102.8E-21256317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-21257318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-14263309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-19265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNQYGPDWSS SMGDAFAELN GDDDGLIELM WCNGHVVMQS QAPRKPPRPE KAPAAAVQDD  60
EAAAWFQYPV AAEDPLERDL FTELFGEAQA ADDAGSGRAC KEEAECAGDA APQSSGLMPP  120
PRPREKACFG DLGDVEDGTA ATATATATEA GESSMLTIGS SFCGSNHVQT PRARAPFDGA  180
PPPGDAGKAG GKARDAATVT SSSMRPTSCT TKAGQPSASA NRSGKRKQSD STDAEDAEFE  240
SADVTCEPAQ KLTTAKRRRA AEVHNLSERR RRDRINEKMK ALQELIPHCN KTDKASMLDE  300
AIEYLKSLQL QLQMMWMGGG MAAAAAAPVM FPAGVHQYMQ RMVAPPHVAS MPRMTFMAPP  360
AVQSPPVADP YARYLAVDHL QPPPSTMHYL QGMGFYQQQQ QSPALPAPPT R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256271RRRAAEVHNLSERRRR
2267272ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G401300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558762e-82BT055876.1 Zea mays full-length cDNA clone ZM_BFc0002C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963135.10.0transcription factor PIF4 isoform X1
RefseqXP_004963136.10.0transcription factor PIF4 isoform X1
RefseqXP_022680515.10.0transcription factor PIF4 isoform X1
TrEMBLK3Z6M70.0K3Z6M7_SETIT; Uncharacterized protein
STRINGSi022196m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-29phytochrome interacting factor 3