PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G405000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 197aa    MW: 22068.1 Da    PI: 8.9999
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G405000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2405.1e-7441683170
               YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                         +   +++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+  ++ l+ ++h     + +l + +++ ++ ++ n+ +  s+s
  Sevir.3G405000.1.p   4 HIAPADHVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVNLRALMHSLPEQDH-----QLQLFDSQENIKHGINGNHLEFGSSS 89 
                         56789******************************************************9.....33344555555555666666666666 PP

               YABBY  94 tsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         ++ +  ++  ++ne++ ++++    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  Sevir.3G405000.1.p  90 SKFRLPMMysPQNEHHLLQEQTLNARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 168
                         6666666642444444444444488****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-737168IPR006780YABBY protein
SuperFamilySSF470953.67E-8114162IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-5115162IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSAHIAPADH VCYVHCNFCN TVLAVSVPGN SMLNIVTVRC GHCTNLLSVN LRALMHSLPE  60
QDHQLQLFDS QENIKHGING NHLEFGSSSS KFRLPMMYSP QNEHHLLQEQ TLNARPPEKR  120
QRVPSAYNRF IKEEIRRIKA NNPDISHREA FSTAAKNWAH YPNIHFGLSS GREGGKKLVD  180
EAVSVTPPPK KIQGLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G405000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0358121e-87BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds.
GenBankBT0416681e-87BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds.
GenBankBT0684091e-87BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds.
GenBankKJ7268491e-87KJ726849.1 Zea mays clone pUT3389 C2C2-YABBY transcription factor (YAB5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963174.11e-147protein YABBY 6 isoform X1
SwissprotQ2QM171e-89YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A368QNF41e-145A0A368QNF4_SETIT; Uncharacterized protein
STRINGSi023308m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-60YABBY family protein