PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G405000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 192aa    MW: 21477.5 Da    PI: 9.2664
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G405000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY236.75.1e-7341633170
               YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                         +   +++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+  ++ l+ ++h   +l+e+      +++ n +  +  ++s++
  Sevir.3G405000.2.p   4 HIAPADHVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVNLRALMHSLPEQDH---QLQEN-----IKHGINGNHLEFGSSSSK 86 
                         56789*****************************************************98...44444.....444444444444444444 PP

               YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            +++  ++ne++ ++++    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  Sevir.3G405000.2.p  87 FRLPMMYSPQNEHHLLQEQTLNARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 163
                         44444332444444444444578****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.0E-747163IPR006780YABBY protein
SuperFamilySSF470953.53E-8109157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.0E-5110157IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSAHIAPADH VCYVHCNFCN TVLAVSVPGN SMLNIVTVRC GHCTNLLSVN LRALMHSLPE  60
QDHQLQENIK HGINGNHLEF GSSSSKFRLP MMYSPQNEHH LLQEQTLNAR PPEKRQRVPS  120
AYNRFIKEEI RRIKANNPDI SHREAFSTAA KNWAHYPNIH FGLSSGREGG KKLVDEAVSV  180
TPPPKKIQGL Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G405000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0358128e-98BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds.
GenBankBT0416688e-98BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds.
GenBankBT0684098e-98BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds.
GenBankKJ7268498e-98KJ726849.1 Zea mays clone pUT3389 C2C2-YABBY transcription factor (YAB5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681237.11e-142protein YABBY 6 isoform X2
SwissprotQ2QM176e-91YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A368QNF41e-139A0A368QNF4_SETIT; Uncharacterized protein
STRINGSi023308m1e-139(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-61YABBY family protein