PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G413100.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 165aa    MW: 18347.7 Da    PI: 6.3854
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G413100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.31.8e-16107142137
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 
                         +ep+YVNaKQy++Il+RRq+Rak+e+e+kl  k+rk 
  Sevir.3G413100.4.p 107 EEPVYVNAKQYNAILRRRQSRAKAESERKL-VKGRKV 142
                         69****************************.999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.7E-8105160IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115216.994106141IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-11108142IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTSVVHSVSG DHRAEDQHQQ QKQAEPEDQQ EAPVTSSDSQ PTVGTPSDYV APYAPHDMGH  60
AMGQYAYPNI DPYYGSLYAA YGGQPMMHPP LVGMHPTGLP LPTDAIEEPV YVNAKQYNAI  120
LRRRQSRAKA ESERKLVKGR KVNLCNYLLQ CDMNWILLIS FFCP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G413100.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699191e-156EU969919.1 Zea mays clone 337251 nuclear transcription factor Y subunit A-7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963231.11e-100nuclear transcription factor Y subunit A-7
TrEMBLK3Z9K51e-98K3Z9K5_SETIT; Uncharacterized protein
STRINGSi023231m2e-99(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-24nuclear factor Y, subunit A7