PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G419500.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 386aa    MW: 40021.7 Da    PI: 7.4785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G419500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.4e-15195241455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++ErrRR++iN++f eL +++P++     kK++Ka+iL  Av+Y+++Lq
  Sevir.3G419500.3.p 195 DHIIAERRRREKINQRFIELSTVIPEL-----KKMDKATILGDAVKYVRKLQ 241
                         5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.758191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-19195250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-13196241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-14196245No hitNo description
SuperFamilySSF474595.37E-17196250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-17197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDRHMEDSST FLQWAMNQLH HQQPSAAAAA SAYQDGAGAG GSGAAGNSEA VFPSLQALRS  60
GAPQTQPQPV AASVRVRDLT VQVDHRTNSS SSGDSPGGGA AMDHDATTGW SPHTARSRTT  120
GLGGGSNSRP MSWNFSAAAA QPAACESGGG VALPDAAVAA RAVQLPSAGR RGGGSAAPAA  180
AAAAAPSSSP GPVQDHIIAE RRRREKINQR FIELSTVIPE LKKMDKATIL GDAVKYVRKL  240
QEKVKTLEED GAHSAGGSSS MVQSAVLVKK PCHLQPEDEA IMASGGGGDG GQLPEIEARL  300
SEKSVLVRIH CRNARGLLVR VISEVEKMHL SITHTNVMPF PASTAIITIT AKVEEGFIAT  360
VDEIVRSINS VLHQHYSSSS EETRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204ERRRRE
2200205RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G419500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643401e-82BT064340.1 Zea mays full-length cDNA clone ZM_BFc0160K20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963288.10.0transcription factor MYC3 isoform X1
TrEMBLK3Z6K20.0K3Z6K2_SETIT; Uncharacterized protein
STRINGSi022171m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-40bHLH family protein