PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G421800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 166aa MW: 17721.2 Da PI: 11.9149

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G421800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.4	5.7e-12	61	110	1	50
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e++ +r rrk++NRe+ArrsR+RK+ +eeL+ ++ L a N++L+ +l Sevir.3G421800.1.p 61 EAAERRLRRKISNRESARRSRARKQRHLEELRARAGRLRAGNSELAARLR 110 567799***************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.3E-9	60	113	No hit	No description
SMART	SM00338	1.3E-9	61	125	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-8	62	111	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.071	63	126	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.46E-8	65	113	No hit	No description
PROSITE pattern	PS00036	0	68	83	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MTPQLPPLSD PALEAFLADI GFGLVPDEPL DVTTTTTTTT TMAATRPEEE TSASAAAAGD 60 EAAERRLRRK ISNRESARRS RARKQRHLEE LRARAGRLRA GNSELAARLR GVQARAALVR 120 LTNARLRAEA GALGRRLAAA QRAIALRQIY AGGGFELQAL ASLIV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRSRARKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G421800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808024.1	2e-28	ocs element-binding factor 1-like
TrEMBL	K3ZCP8	1e-107	K3ZCP8_SETIT; Uncharacterized protein
STRING	Si024325m	1e-108	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15125	19	19

Link Out ? help Back to Top
Phytozome	Sevir.3G421800.1.p