PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G005900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 213aa    MW: 23752.1 Da    PI: 10.3701
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G005900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.73.6e-2632134199
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+kv tpsdv+k++rlv+pk+ ae+h         ++++ l + d +g    W+++++y+ +s++yv+tkGW+++v++++L +gD+v F+ 
  Sevir.4G005900.1.p  32 FEKVVTPSDVGKLNRLVVPKHLAEKHlplpgAAARAGGTVLCFHDARGgeAAWRFRYSYWSSSQSYVMTKGWSRYVRDKRLAAGDTVSFY- 121
                         99***************************98555678899*****9998999**************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                           r++++l++  +r+
  Sevir.4G005900.1.p 122 --RDGARLFIDCRRR 134
                         ..5667788988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-3325134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.09E-2727133IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-1831125No hitNo description
SMARTSM010191.7E-1832135IPR003340B3 DNA binding domain
PROSITE profilePS5086312.19632135IPR003340B3 DNA binding domain
PfamPF023625.1E-2332134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MALTLALESS SSSRGEGGGD GHGSCRPRES MFEKVVTPSD VGKLNRLVVP KHLAEKHLPL  60
PGAAARAGGT VLCFHDARGG EAAWRFRYSY WSSSQSYVMT KGWSRYVRDK RLAAGDTVSF  120
YRDGARLFID CRRRRRAGVV PAVPPRQPQQ AFFFHNQQQA AVQPQQHLVV APRVVVVDDE  180
VEEARRRRCL RLFGVNLELE LRAEPLLLDL QL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-402913411117DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G005900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006161e-75AP000616.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0514G12.
GenBankAP0011291e-75AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149621e-75AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankKC0191721e-75KC019172.1 Oryza sativa Indica Group cultivar TN1 insect-resistance protein (BPH29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681403.11e-153B3 domain-containing protein Os06g0107800
SwissprotQ5VS553e-56Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLK3Y2S91e-152K3Y2S9_SETIT; Uncharacterized protein
STRINGSi008509m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.19e-39related to ABI3/VP1 1