PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.4G008000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 186aa MW: 20286.9 Da PI: 4.5554

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G008000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.3	1.2e-12	67	145	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f +vl++s v k+ +lv+p + ++ + + tl +grsW ++ + k ++ + + W++F+ +ngL++gD +vF+l+ Sevir.4G008000.1.p 67 FTTVLSKSQVQKQFQLVIPARLHRHLpE----ARVPATLLC-RGRSWAASYCGDLKCKK--IDAAWRDFAVDNGLRVGDACVFELV 145 8899***************9855431....233455554.99***66666555..8999*****************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.8E-18	60	163	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.39E-15	62	160	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.28E-17	65	163	No hit	No description
Pfam	PF02362	1.2E-10	67	146	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.364	67	165	IPR003340	B3 DNA binding domain
SMART	SM01019	5.1E-6	67	165	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
METPGFPSTS KQQPDPDGST KFKIEAGGIK PKVEPCEEEE EHLPPLPPPV SDDDWEVTPL 60 SGEHPFFTTV LSKSQVQKQF QLVIPARLHR HLPEARVPAT LLCRGRSWAA SYCGDLKCKK 120 IDAAWRDFAV DNGLRVGDAC VFELVTPAAG DGEEVVFRVQ VLRGDLPEEI TSKGATSDEP 180 LVIVD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G008000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964321.1	1e-133	B3 domain-containing protein Os06g0112300 isoform X1
Swissprot	Q9LHY9	9e-46	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	K3XZI1	1e-132	K3XZI1_SETIT; Uncharacterized protein
STRING	Si007342m	1e-132	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	2e-07	B3 family protein

Link Out ? help Back to Top
Phytozome	Sevir.4G008000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]