PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G037500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 191aa    MW: 19774 Da    PI: 4.9622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G037500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.2e-161564255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr++k + rW++eIr p++   r r++lg+++ +e+Aa+a +aa ++l+g
  Sevir.4G037500.1.p 15 KYKGVRRRK-WVRWASEIRLPNS---RDRIWLGSYDAPEKAARAFDAAYLCLRG 64
                        8*****998.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-241474IPR001471AP2/ERF domain
PfamPF008475.8E-91564IPR001471AP2/ERF domain
PROSITE profilePS5103220.9561574IPR001471AP2/ERF domain
SMARTSM003803.5E-241580IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-161574IPR016177DNA-binding domain
CDDcd000181.21E-221574No hitNo description
PRINTSPR003673.7E-71627IPR001471AP2/ERF domain
PRINTSPR003673.7E-73854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQPSAAAAAP AGERKYKGVR RRKWVRWASE IRLPNSRDRI WLGSYDAPEK AARAFDAAYL  60
CLRGSGGADG LNFPGSPPGV RRTSDPNEVY AAAVSHADPA AADVDPWDAA QPPPEPTLQA  120
HGDVAPMEPA PAPAAPPAPL QLLADLPPLF SPTEVGSHAY LLPASPTAAD ANTMEENGSG  180
SGSGSGLWSF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622KGVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G037500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700624.12e-73ethylene-responsive transcription factor ERF017
TrEMBLA0A368QSH72e-96A0A368QSH7_SETIT; Uncharacterized protein
STRINGSi008682m3e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.14e-29ERF family protein