PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G037900.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 982aa    MW: 108412 Da    PI: 6.8429
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G037900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22127227198
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++  sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +
  Sevir.4G037900.2.p 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIR 215
                         99*****************************96555444..8************************************************4 PP

                         -SSSEE..EEEEE- CS
                  B3  85 dgrsefelvvkvfr 98 
                           +++ +l+++++ 
  Sevir.4G037900.2.p 216 --DEKSQLLLGIRH 227
                         ..566667888876 PP
2Auxin_resp1232.1e-40253335183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds  rr++Gt++g+ dldp+rW+nS+Wr+L+
  Sevir.4G037900.2.p 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPIRWKNSHWRNLQ 335
                         79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-44117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-40119242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-19126226No hitNo description
SMARTSM010191.4E-22127229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97127229IPR003340B3 DNA binding domain
PfamPF023621.6E-20127227IPR003340B3 DNA binding domain
PfamPF065073.8E-35253335IPR010525Auxin response factor
PfamPF023092.2E-9863952IPR033389AUX/IAA domain
PROSITE profilePS5174525.747866959IPR000270PB1 domain
SuperFamilySSF542779.81E-9882945No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 982 aa     Download sequence    Send to blast
MKDPGSGGVT PSPAEGDKKP INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK  60
ELDTIPSYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN  120
KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR  180
HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRHASR PQPALSSSVL  240
SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML  300
FETEDSGVRR YMGTITGIGD LDPIRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT  360
PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLGD DFALKDVQNA LFPGLSLVQW  420
MAMQQNPQML TAAAPAVQSQ YLTSNALGMQ DGIGGVNEDP AKRLSMQAQN VGLPNLQAGS  480
KVDHPAITSL AQQQQQQHPI LQQQQVQPLQ QNSAILQQQQ AQLLQQNAIH LQQQQEQLQR  540
QQSQPPQQLK ATASLQPMDQ HKLKEQQPSG GQAVSQAQLL NQILQPSSSQ IQQLGLPKSP  600
TQRPGLPGLT TMGSLPQPQL TQTPQLQQTA EYQQALLQSQ QPQLQQLSQS ELQLQLLQKI  660
QQQNLLSQLN PQHQSQLIQQ LSQKSQEILQ QQVLQHQLGG ADTMGQLKHL QQTPLNHMTG  720
SMTPQQLVRS HSALAESEEP SSSTAPSGSR VSPINSLSRA QQGSRNLPEI PSTPHIEHLL  780
QEIQNTLMPD ALLSRGMSSG KGICNLPTGQ RDHRDVENEL SSAAFSSQSF GVPDMSFKPG  840
CSSDVAVADG GMASQGLWNS QTQRMRTFTK VQKRGSVGRS IDITRYRGYE DLRHDLACMF  900
GIQGQLEDPY RTDWKLVYVD HENDILLVGD DPWEEFVSCV KSIKILSSAE VQQMSLDGDL  960
GCIPPQGQAC SASDDANAWR G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661635645388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G037900.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277410.0KJ727741.1 Zea mays clone pUT5682 ARF transcription factor (ARF27) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659167.10.0auxin response factor 16 isoform X1
SwissprotA3B9A00.0ARFP_ORYSJ; Auxin response factor 16
TrEMBLD9HNV40.0D9HNV4_MAIZE; Auxin response factor
STRINGGRMZM2G160005_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Shen C, et al.
    OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.).
    Plant Cell Environ., 2013. 36(3): p. 607-20
    [PMID:22913536]
  2. Shen C, et al.
    OsARF16 is involved in cytokinin-mediated inhibition of phosphate transport and phosphate signaling in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(11): p. e112906
    [PMID:25386911]
  3. Shen C, et al.
    OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).
    Plant Sci., 2015. 231: p. 148-58
    [PMID:25576000]