PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G059600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 245aa    MW: 26297.2 Da    PI: 7.3492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G059600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-16115161455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Sevir.4G059600.2.p 115 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 161
                         6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-20108171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-21108172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.51E-18114165No hitNo description
PfamPF000106.0E-14115161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-18117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDEQGLGGFG GGGRGAVRDH GREAMALLQH QQHQQRRRQL EEEEEEAAAR RQMFAGVAAF  60
PAAAALGLGH GGQQVDYGEE ADGLGDSDAG GSEPEPAQAR QRGGSGSKRS RAAEVHNLSE  120
KRRRSKINEK MKALQSLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSMR NGVYLNPPYL  180
SGALEPAQAS QMFAALGGGH ITASSSGAVM PPVNQSSGAH QNINFNWNRH SPTFEHFGCL  240
NLLR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G059600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353601e-177BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds.
GenBankKJ7268601e-177KJ726860.1 Zea mays clone pUT3401 bHLH transcription factor (bHLH125) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811540.11e-100uncharacterized protein LOC112889235 isoform X1
TrEMBLA0A2T7E2L41e-101A0A2T7E2L4_9POAL; Uncharacterized protein
STRINGGRMZM2G017349_P015e-99(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-36bHLH family protein