PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G092900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 395aa    MW: 43109.9 Da    PI: 4.7128
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G092900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l  +s
  Sevir.4G092900.1.p  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLCHFS 58
                        79********************************************9987 PP
2K-box25.74.7e-10111179977
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                           +++ e+lq+e++k + +++ L++ +R +  + L+  s++e +  e+ L + l ++ ++K+ ll++++
  Sevir.4G092900.1.p 111 PVNSNIEELQNEIRKYQHQVQALEERIRMFEPDPLSLASMNEVEATEKFLMETLARVEERKKYLLCNHM 179
                         567899***********************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.268161IPR002100Transcription factor, MADS-box
CDDcd002652.00E-36278No hitNo description
SuperFamilySSF554553.27E-29281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SNRLCHFSGR  60
RRIEDVITKY INLPENDRGG IVRNREYLIK MLTQLKCEGD IAEQLTPNKG PVNSNIEELQ  120
NEIRKYQHQV QALEERIRMF EPDPLSLASM NEVEATEKFL METLARVEER KKYLLCNHMG  180
PFDPSPSDMQ HVFGLPPPAP APPPQQQQGD MGVGAFGGVG GDVGSWFADG ASIFAGQDPI  240
LAFREQVMFD SMRRDAAGVD PTGGMEAMCH VDQHGGPSED WQQAYMSADL LSALIPSTPF  300
PLDDDQVTSR DDELDKPSTA RFSVHELEAV IQDAMVDPVL ASPPPMVPPP PPPPHVHEPP  360
VEAAGSCSSV PPGGDCAAAG QEHGGLPGGA VNMG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-18175174Myocyte-specific enhancer factor 2B
1tqe_Q1e-18175174Myocyte-specific enhancer factor 2B
1tqe_R1e-18175174Myocyte-specific enhancer factor 2B
1tqe_S1e-18175174Myocyte-specific enhancer factor 2B
6byy_A9e-19175174MEF2 CHIMERA
6byy_B9e-19175174MEF2 CHIMERA
6byy_C9e-19175174MEF2 CHIMERA
6byy_D9e-19175174MEF2 CHIMERA
6bz1_A9e-19175174MEF2 CHIMERA
6bz1_B9e-19175174MEF2 CHIMERA
6bz1_C9e-19175174MEF2 CHIMERA
6bz1_D9e-19175174MEF2 CHIMERA
6c9l_A1e-18175174Myocyte-specific enhancer factor 2B
6c9l_B1e-18175174Myocyte-specific enhancer factor 2B
6c9l_C1e-18175174Myocyte-specific enhancer factor 2B
6c9l_D1e-18175174Myocyte-specific enhancer factor 2B
6c9l_E1e-18175174Myocyte-specific enhancer factor 2B
6c9l_F1e-18175174Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G092900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681960.10.0agamous-like MADS-box protein AGL66
TrEMBLA0A368QSS00.0A0A368QSS0_SETIT; Uncharacterized protein
STRINGPavir.Db01574.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-70AGAMOUS-like 104