PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G126900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 581aa    MW: 62420.7 Da    PI: 8.7773
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G126900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.43.3e-24146203359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D ++WrKYGqK++kgs++pr YY+C++  +C+++k v+r+ +dp+++++ Y  +H h+
  Sevir.4G126900.1.p 146 DTWSWRKYGQKSIKGSPNPRRYYKCSTDkQCKARKYVQRCGDDPRYLVVSYIRDHSHT 203
                         99***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-26133205IPR003657WRKY domain
SuperFamilySSF1182908.76E-23139205IPR003657WRKY domain
SMARTSM007741.7E-26144204IPR003657WRKY domain
PROSITE profilePS5081126.9146205IPR003657WRKY domain
PfamPF031061.8E-20146202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MGGFGYHENS SYNGNDWDLD AVVRFACGDP LPQLPPTNKD RVARSPRRSC TTRCLTADAV  60
DLPPPPDPTA VVGGGQLRAS LQRLSRSRRI WPEDLYDSLF DPLFPDMNMP EPSSGGGGAG  120
STTSRSNRRR NYRMVTRVLD GAPPPDTWSW RKYGQKSIKG SPNPRRYYKC STDKQCKARK  180
YVQRCGDDPR YLVVSYIRDH SHTTPLVRNS ATGTTTGVKP PLPPSPFVNI TAVAQQAPAP  240
PAFASASLSL PTTPPLRSPS GGFNDAIALR KTRLKDVDMT PEEDSAPFAM LDDEPLDGLL  300
FYTADELAPV GAGGGNNNLT FPMPYETAGC SSSGSDGSTA STSVGAGTAP VSAPVANVVD  360
EMFYLESWDS HWDDRIRATR AYRHLPPGSL RHGPPTTAAA LLPGRVMEVL APPSPPDAPS  420
HIGRNSLPSL TPPAAHRYRP PAPPFSPPDP SPVPRPPTPS ASPRRIRWPQ IGPPLLCPQP  480
ARRSFALDLE MAVALLASMY PPSSPPSWGS SRRRPSDLLP PFPVLDQAAF LLYELPPLMP  540
MSPVPAKSFL SPSAVSSVFS EFHDLAPCPA LSKAVGFVSC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-121462051977Probable WRKY transcription factor 4
2lex_A2e-121462051977Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G126900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368QUT40.0A0A368QUT4_SETIT; Uncharacterized protein (Fragment)
STRINGSi008215m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2773445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-21WRKY family protein