PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G131200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 215aa    MW: 23203.7 Da    PI: 10.2824
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G131200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.91.1e-172162243
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        rie+k +rqvt++kR+ g++KK +EL  LC+a vav ifs++
  Sevir.4G131200.1.p 21 RIEDKEKRQVTLCKRKGGLFKKCSELQLLCGAHVAVAIFSKR 62
                        8***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.3621262IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-211271IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-191365IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-141434IPR002100Transcription factor, MADS-box
PfamPF003191.7E-182161IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-143449IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-144970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTMVKPGKKT SKGRQKIEIR RIEDKEKRQV TLCKRKGGLF KKCSELQLLC GAHVAVAIFS  60
KREDHQPQGS EAPPAATGGR PSRGGSVFAM GTPSVDHVLR RFAPLPGDVH VEDAGCVAAA  120
ERAAVEVAAR EMRETAALVD AEKKRMEAIG EKVVRAAEAA GKRFWWEADV EALGEGELPE  180
FARALQRVRE IVQREAGKRQ ASAPPAAAAA PWHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G131200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965484.11e-151agamous-like MADS-box protein AGL62
TrEMBLA0A368QWU71e-150A0A368QWU7_SETIT; Uncharacterized protein
STRINGSi007275m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-23AGAMOUS-like 62