PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G149400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 254aa    MW: 26353.8 Da    PI: 4.6391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G149400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-183479352
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                        y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ 
  Sevir.4G149400.1.p 34 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAALV 79
                        9****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-123279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-313391IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-213390IPR016177DNA-binding domain
PROSITE profilePS5103223.1823390IPR001471AP2/ERF domain
SMARTSM003803.4E-353396IPR001471AP2/ERF domain
CDDcd000181.01E-193491No hitNo description
PRINTSPR003671.2E-103445IPR001471AP2/ERF domain
PRINTSPR003671.2E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MPDSDAASPA SLPAGVEKKG GRGRKSGGGW RPAYRGVRMR AWGKWVSEIR EPRKKSRIWL  60
GTFPTAEMAA RAHDAAALVV KGPAAVLNFP EIAASLPRPA SAAPRDVQAA AARAAAMDMP  120
AAAVVTAATV PPAAPKEPSP SPHQQVPAEQ ALVVADPDEE ELEEIVELPA IDEDALAAAA  180
ADDMFWTAAA SFHDSASADP WYEPAAAWMH AAGIAAHVDD MLVVPGLAAD QQLWAPQPDG  240
IVSSGFGALL WNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-171990372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G149400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745751e-115EU974575.1 Zea mays clone 453357 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660533.11e-171ethylene-responsive transcription factor ERF039
SwissprotQ9LYD36e-48DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLK3XYY61e-170K3XYY6_SETIT; Uncharacterized protein
STRINGSi007144m1e-170(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.15e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]