PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.4G184800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 139aa MW: 14451.2 Da PI: 4.4575

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G184800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.5e-06	105	126	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk F++ +L H+++H Sevir.4G184800.1.p 105 ECPECGKFFKNDKSLFGHLQSH 126 6******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.18	104	131	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	106	126	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MSKGSFLCSL VLLQVCIVQL SLISSQLTGA QVGDNPLCQD PIQRARLMSS HGLVDTGDEY 60 ASNDGGVAAV VGGEAAVEEE EGLLHPDGED SCGTKDSSGI GGDVECPECG KFFKNDKSLF 120 GHLQSHPNRG YKGALLRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G184800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813526.1	8e-42	uncharacterized protein LOC112890871
TrEMBL	A0A2T7DZS0	3e-42	A0A2T7DZS0_9POAL; Uncharacterized protein
STRING	Pavir.Da01512.1.p	1e-39	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13916	20	28

Link Out ? help Back to Top
Phytozome	Sevir.4G184800.1.p