PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G191900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 189aa    MW: 20076.5 Da    PI: 4.907
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G191900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB118.23.8e-3717109496
               NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                         ++r +P a v+rim+k+ P n+ki+ dake v++c +ef +f+t+ a++ c+r+kr t++gddl+ a+ +lGf+dyv pl++yl++yre+e
  Sevir.4G191900.1.p  17 EERKIPRATVARIMRKATPPNSKIGADAKEAVDQCLVEFAAFITQVAAEECRRDKRTTVTGDDLILAFKNLGFDDYVGPLTLYLHRYREIE 107
                         6899*************************************************************************************** PP

               NF-YB  95 ge 96 
                         g+
  Sevir.4G191900.1.p 108 GN 109
                         97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-339119IPR009072Histone-fold
SuperFamilySSF471139.43E-2817110IPR009072Histone-fold
PfamPF008087.7E-182083IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-64866No hitNo description
PRINTSPR006151.2E-66785No hitNo description
PRINTSPR006151.2E-686104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDEHQANDQR DATEAPEERK IPRATVARIM RKATPPNSKI GADAKEAVDQ CLVEFAAFIT  60
QVAAEECRRD KRTTVTGDDL ILAFKNLGFD DYVGPLTLYL HRYREIEGNM PRARHSTMRS  120
QGAPPAPAAL TVEAAAAPSS GLTLQLGPPS VPDVTELGLH ADVYAVWRGA AAPAAAGTSQ  180
APSGADEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-2917105997NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G191900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966907.11e-114nuclear transcription factor Y subunit B-1
TrEMBLA0A368QTH71e-132A0A368QTH7_SETIT; Uncharacterized protein
STRINGSi007865m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140561326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.56e-36nuclear factor Y, subunit B1