PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G218000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 247aa    MW: 26828.7 Da    PI: 6.5099
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G218000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-112801895
                        --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                        +p +fa+  gg+ +    + l ++ g++W   l+  +++g+     l++GW eF+ a+g+++g +vvF+l++r  +  +++
  Sevir.4G218000.2.p  2 VPGEFAAWLGGEARAAAAVLLVSPLGKVWHADLRRAGGGGGpgpLQLAGGWAEFAAAHGVRAGWSVVFRLERRGVA--TLR 80
                        688999888999999999***************6644444488899***********************9987666..454 PP
2B352.21.1e-16113197897
                         -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +d l+   +++p +f++eh    ++++k  ++ ++ g+ W+v+l  ++ + +++l++GW +F  a++L eg ++vF++++++ f  +v vf
  Sevir.4G218000.2.p 113 ADDLE--KMRIPDEFVQEHlTDTHPSNKRAMIFSPLGKFWRVEL--DRDQPGVLLGDGWVRFLTAHDLSEGNILVFRYEDNMVF--TVEVF 197
                         44444..58***********666678899***************..********************************999999..77777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.464185IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-11287IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-9281IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-12287IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-82075No hitNo description
SuperFamilySSF1019368.04E-20103202IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-20103202IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.324104200IPR003340B3 DNA binding domain
CDDcd100175.16E-17105197No hitNo description
SMARTSM010192.4E-11107200IPR003340B3 DNA binding domain
PfamPF023621.0E-13115197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
RVPGEFAAWL GGEARAAAAV LLVSPLGKVW HADLRRAGGG GGPGPLQLAG GWAEFAAAHG  60
VRAGWSVVFR LERRGVATLR AFDAAGCLAR FCTPLAGVAA GKNRPRFIRV LNADDLEKMR  120
IPDEFVQEHL TDTHPSNKRA MIFSPLGKFW RVELDRDQPG VLLGDGWVRF LTAHDLSEGN  180
ILVFRYEDNM VFTVEVFMQS GCLKEYEAAT ADMTDDAIGR QITVPQQGEP AHCTSSEWLQ  240
LCIATL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G218000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681867.11e-152LOW QUALITY PROTEIN: putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL77e-88Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLK3Y2K31e-130K3Y2K3_SETIT; Uncharacterized protein
STRINGSi008427m1e-131(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.13e-14B3 family protein