PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G223900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 75aa    MW: 8198.44 Da    PI: 9.8001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G223900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-053153123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ykC+ C+k+F+++     H++ H
  Sevir.4G223900.1.p 31 YKCSFCTKTFKSPQARGGHQNAH 53
                        9***********98777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.36E-62856No hitNo description
Gene3DG3DSA:3.30.160.604.9E-42856IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.4733158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MAGKASSNPK ECYPYALSSL GYAPKNLETL YKCSFCTKTF KSPQARGGHQ NAHKKEIAAL  60
RRTLEEEMAN KCAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G223900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W0VTX22e-28A0A1W0VTX2_SORBI; Uncharacterized protein
STRINGPavir.Da00436.1.p1e-36(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2103446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-09C2H2 family protein